STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI91267.1TRAP transporter, DctM subunit. (412 aa)    
Predicted Functional Partners:
SDI91289.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
    0.937
SDI91241.1
Tripartite ATP-independent transporter, DctQ component.
 
  0.872
SDJ39658.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
    0.779
SDI39300.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
    0.778
SDJ03026.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.778
SDI40048.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.777
SDI49133.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
    0.777
SDI61913.1
C4-dicarboxylate-binding protein DctP.
  
    0.777
SDI40308.1
C4-dicarboxylate-binding protein DctP.
  
    0.776
SDI63778.1
C4-dicarboxylate-binding protein DctP.
 
    0.773
Your Current Organism:
Salipiger marinus
NCBI taxonomy Id: 555512
Other names: CCTCC AB 209064, Citreicella marina, Citreicella marina Lai et al. 2011, Citreicella sp. CK-I3-6, DSM 26424, LMG 25230, LMG:25230, MCCC 1A03060, Roseobacter sp. CK-I3-6, strain CK-I3-6
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.