STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI92234.12-keto-3-deoxy-L-rhamnonate aldolase RhmA; Belongs to the HpcH/HpaI aldolase family. (253 aa)    
Predicted Functional Partners:
SDJ12594.1
2-oxo-3-hexenedioate decarboxylase.
  
 
 0.881
SDJ16764.1
2-keto-3-deoxy-L-rhamnonate aldolase RhmA; Belongs to the HpcH/HpaI aldolase family.
  
  
 
0.802
SDI92212.1
TRAP transporter, 4TM/12TM fusion protein.
       0.697
hisD-3
Sulfopropanediol 3-dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
 
     0.681
SDI55522.1
2-keto-4-pentenoate hydratase.
  
 
 0.602
SDI92279.1
2-deoxy-D-gluconate 3-dehydrogenase.
 
  
  0.590
SDI92191.1
Hypothetical protein.
       0.495
SDI38891.1
L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
 
  0.451
SDI48279.1
L-alanine-DL-glutamate epimerase.
 
 
  0.420
SDJ35505.1
L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
 
  0.409
Your Current Organism:
Salipiger marinus
NCBI taxonomy Id: 555512
Other names: CCTCC AB 209064, Citreicella marina, Citreicella marina Lai et al. 2011, Citreicella sp. CK-I3-6, DSM 26424, LMG 25230, LMG:25230, MCCC 1A03060, Roseobacter sp. CK-I3-6, strain CK-I3-6
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