STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI94125.1Cytochrome P450. (450 aa)    
Predicted Functional Partners:
SDI80618.1
Acyl transferase domain-containing protein.
 
 0.994
SDI91420.1
Enterobactin synthetase component F; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.974
SDI94145.1
Hypothetical protein.
 
 
  0.959
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.903
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.845
cysC-2
Sulfate adenylyltransferase; Catalyzes the synthesis of activated sulfate.
   
 0.845
SDI42727.1
Ferredoxin-NADP reductase.
  
 0.825
SDI46531.1
2Fe-2S iron-sulfur cluster binding domain-containing protein.
  
 0.825
SDJ10135.1
Phthalate 4,5-dioxygenase, reductase subunit.
  
 0.825
SDJ18916.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 0.825
Your Current Organism:
Salipiger marinus
NCBI taxonomy Id: 555512
Other names: CCTCC AB 209064, Citreicella marina, Citreicella marina Lai et al. 2011, Citreicella sp. CK-I3-6, DSM 26424, LMG 25230, LMG:25230, MCCC 1A03060, Roseobacter sp. CK-I3-6, strain CK-I3-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.