STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ03103.1Raffinose/stachyose/melibiose transport system substrate-binding protein. (419 aa)    
Predicted Functional Partners:
SDJ03110.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-).
 
  0.952
SDJ03139.1
Raffinose/stachyose/melibiose transport system permease protein.
 
  0.925
SDI25911.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-).
 
  0.917
SDJ03171.1
Multiple sugar transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
  
  0.831
SDJ03150.1
Xylan 1,4-beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.793
SDJ03187.1
Predicted dehydrogenase.
 
     0.766
SDI74193.1
Maltose ABC transporter membrane protein.
  
  0.745
SDJ03212.1
Hypothetical protein.
 
     0.738
SDI55968.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-).
  
  0.723
SDI89954.1
Multiple sugar transport system permease protein.
  
  0.713
Your Current Organism:
Salipiger marinus
NCBI taxonomy Id: 555512
Other names: CCTCC AB 209064, Citreicella marina, Citreicella marina Lai et al. 2011, Citreicella sp. CK-I3-6, DSM 26424, LMG 25230, LMG:25230, MCCC 1A03060, Roseobacter sp. CK-I3-6, strain CK-I3-6
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