Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDI26524.1 | SDI85704.1 | SAMN04487993_1002343 | SAMN04487993_101187 | Lipopolysaccharide export system ATP-binding protein. | KDO2-lipid IV(A) lauroyltransferase. | 0.404 |
SDI26524.1 | SDJ32526.1 | SAMN04487993_1002343 | SAMN04487993_102625 | Lipopolysaccharide export system ATP-binding protein. | Lipopolysaccharide export system permease protein. | 0.998 |
SDI26524.1 | SDJ32546.1 | SAMN04487993_1002343 | SAMN04487993_102626 | Lipopolysaccharide export system ATP-binding protein. | Lipopolysaccharide export system permease protein. | 0.997 |
SDI26524.1 | lptD | SAMN04487993_1002343 | SAMN04487993_102624 | Lipopolysaccharide export system ATP-binding protein. | LPS-assembly protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. | 0.794 |
SDI26524.1 | lpxK | SAMN04487993_1002343 | SAMN04487993_1002116 | Lipopolysaccharide export system ATP-binding protein. | lipid-A-disaccharide kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). | 0.495 |
SDI85704.1 | SDI26524.1 | SAMN04487993_101187 | SAMN04487993_1002343 | KDO2-lipid IV(A) lauroyltransferase. | Lipopolysaccharide export system ATP-binding protein. | 0.404 |
SDI85704.1 | SDI95173.1 | SAMN04487993_101187 | SAMN04487993_101377 | KDO2-lipid IV(A) lauroyltransferase. | Hypothetical protein. | 0.699 |
SDI85704.1 | SDJ32526.1 | SAMN04487993_101187 | SAMN04487993_102625 | KDO2-lipid IV(A) lauroyltransferase. | Lipopolysaccharide export system permease protein. | 0.721 |
SDI85704.1 | SDJ32546.1 | SAMN04487993_101187 | SAMN04487993_102626 | KDO2-lipid IV(A) lauroyltransferase. | Lipopolysaccharide export system permease protein. | 0.723 |
SDI85704.1 | lptD | SAMN04487993_101187 | SAMN04487993_102624 | KDO2-lipid IV(A) lauroyltransferase. | LPS-assembly protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. | 0.556 |
SDI85704.1 | lpxK | SAMN04487993_101187 | SAMN04487993_1002116 | KDO2-lipid IV(A) lauroyltransferase. | lipid-A-disaccharide kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). | 0.935 |
SDI95173.1 | SDI85704.1 | SAMN04487993_101377 | SAMN04487993_101187 | Hypothetical protein. | KDO2-lipid IV(A) lauroyltransferase. | 0.699 |
SDI95173.1 | SDJ32526.1 | SAMN04487993_101377 | SAMN04487993_102625 | Hypothetical protein. | Lipopolysaccharide export system permease protein. | 0.670 |
SDI95173.1 | SDJ32546.1 | SAMN04487993_101377 | SAMN04487993_102626 | Hypothetical protein. | Lipopolysaccharide export system permease protein. | 0.693 |
SDI95173.1 | lpxK | SAMN04487993_101377 | SAMN04487993_1002116 | Hypothetical protein. | lipid-A-disaccharide kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). | 0.810 |
SDJ32488.1 | SDJ32526.1 | SAMN04487993_102623 | SAMN04487993_102625 | Periplasmic chaperone for outer membrane proteins SurA. | Lipopolysaccharide export system permease protein. | 0.894 |
SDJ32488.1 | SDJ32546.1 | SAMN04487993_102623 | SAMN04487993_102626 | Periplasmic chaperone for outer membrane proteins SurA. | Lipopolysaccharide export system permease protein. | 0.896 |
SDJ32488.1 | SDJ32590.1 | SAMN04487993_102623 | SAMN04487993_102628 | Periplasmic chaperone for outer membrane proteins SurA. | DNA polymerase III, chi subunit. | 0.760 |
SDJ32488.1 | lptD | SAMN04487993_102623 | SAMN04487993_102624 | Periplasmic chaperone for outer membrane proteins SurA. | LPS-assembly protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. | 0.970 |
SDJ32488.1 | pdxA | SAMN04487993_102623 | SAMN04487993_102622 | Periplasmic chaperone for outer membrane proteins SurA. | 4-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP). | 0.832 |
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