STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ55061.1Tripartite ATP-independent transporter solute receptor, DctP family. (334 aa)    
Predicted Functional Partners:
SDJ55084.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
    0.910
SDJ55107.1
C4-dicarboxylate transporter, DctM subunit.
    0.901
SDI46022.1
TRAP transporter, DctM subunit.
 
    0.779
SDI61869.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
    0.777
SDI09704.1
TRAP transporter, DctM subunit.
 
    0.776
SDI49170.1
TRAP transporter, DctM subunit.
 
    0.776
SDJ39700.1
TRAP transporter, DctM subunit.
 
    0.774
SDJ39224.1
TRAP transporter, DctM subunit.
 
    0.774
SDJ02980.1
TRAP transporter, DctM subunit.
 
    0.773
SDI40012.1
TRAP transporter, DctM subunit.
 
    0.772
Your Current Organism:
Salipiger marinus
NCBI taxonomy Id: 555512
Other names: CCTCC AB 209064, Citreicella marina, Citreicella marina Lai et al. 2011, Citreicella sp. CK-I3-6, DSM 26424, LMG 25230, LMG:25230, MCCC 1A03060, Roseobacter sp. CK-I3-6, strain CK-I3-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.