STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ64689.1Phage terminase large subunit (GpA). (421 aa)    
Predicted Functional Partners:
SDJ63345.1
Hypothetical protein.
 
     0.774
SDJ63509.1
Hypothetical protein.
 
     0.774
SDJ62713.1
Hypothetical protein.
 
     0.772
SDJ63523.1
Hypothetical protein.
 
     0.722
SDJ63367.1
Hypothetical protein.
 
     0.716
SDJ24798.1
Hypothetical protein.
  
     0.626
SDJ62659.1
Phage tail tape measure protein, TP901 family, core region.
 
     0.616
SDJ57428.1
Hypothetical protein.
  
     0.534
SDJ57406.1
HNH endonuclease.
  
     0.507
SDJ24819.1
Hypothetical protein.
  
     0.455
Your Current Organism:
Salipiger marinus
NCBI taxonomy Id: 555512
Other names: CCTCC AB 209064, Citreicella marina, Citreicella marina Lai et al. 2011, Citreicella sp. CK-I3-6, DSM 26424, LMG 25230, LMG:25230, MCCC 1A03060, Roseobacter sp. CK-I3-6, strain CK-I3-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.