STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACX95168.1PFAM: peptidylprolyl isomerase FKBP-type; KEGG: mca:MCA0081 peptidyl-prolyl cis-trans isomerase, FKBP-type. (186 aa)    
Predicted Functional Partners:
ACX96613.1
PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: acr:Acry_0606 NADH-ubiquinone oxidoreductase, chain 49kDa.
   
 
 0.974
ACX95170.1
TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: vcj:VCD_001305 biotin-protein ligase/biotin operon repressor.
       0.781
ACX95169.1
PFAM: peptidase M61 domain protein; KEGG: noc:Noc_1493 peptidase M61.
       0.780
coaX
Putative transcriptional acitvator, Baf family; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.
       0.773
rpsB
TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: tgr:Tgr7_1159 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
   
   0.755
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
   0.734
ACX95167.1
PFAM: Auxin Efflux Carrier; KEGG: tgr:Tgr7_2425 auxin efflux carrier.
       0.586
ACX95166.1
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: tbd:Tbd_0223 thioredoxin; Belongs to the thioredoxin family.
  
   0.548
rpsJ
Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
   
    0.499
Your Current Organism:
Halothiobacillus neapolitanus
NCBI taxonomy Id: 555778
Other names: H. neapolitanus c2, Halothiobacillus neapolitanus ATCC 23641, Halothiobacillus neapolitanus c2, Halothiobacillus neapolitanus str. c2, Halothiobacillus neapolitanus strain c2
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