STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACX95599.1TIGRFAM: ribosomal subunit interface protein; PFAM: sigma54 modulation protein/ribosomal protein S30EA; KEGG: ilo:IL0395 S30EA ribosomal protein. (96 aa)    
Predicted Functional Partners:
rpsU
TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; KEGG: dno:DNO_1081 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.963
rpmA
TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: kpu:KP1_4904 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.959
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
 
   0.959
rpsI
PFAM: ribosomal protein S9; KEGG: pfs:PFLU0840 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.959
rpmH
TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: mms:mma_3697 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
    
 
 0.959
rpmC
TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: csa:Csal_0429 50S ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family.
    
 
 0.958
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
  
   0.958
rpmB
TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: pcr:Pcryo_1989 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
   
   0.957
rpmG
TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: pay:PAU_04370 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
   
   0.957
rpsL
Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
    
 
 0.956
Your Current Organism:
Halothiobacillus neapolitanus
NCBI taxonomy Id: 555778
Other names: H. neapolitanus c2, Halothiobacillus neapolitanus ATCC 23641, Halothiobacillus neapolitanus c2, Halothiobacillus neapolitanus str. c2, Halothiobacillus neapolitanus strain c2
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