STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACX96469.1KEGG: afe:Lferr_0242 type IV secretory pathway VirD2 pilin (relaxase)-like protein. (493 aa)    
Predicted Functional Partners:
ACX96475.1
PFAM: TRAG family protein; KEGG: eba:p2B19 conjugal transfer coupling protein TraG.
 
   
 0.881
ACX96474.1
PFAM: domain of unknown function DUF1738; KEGG: ajs:Ajs_4248 hypothetical protein.
 
     0.869
ACX96445.1
PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region; KEGG: mei:Msip34_2905 CagE TrbE VirB component of type IV transporter system.
 
   
 0.807
ACX96441.1
PFAM: Peptidase S26, conserved region; KEGG: avi:Avi_9596 conjugative transfer signal peptidase TraF.
 
     0.796
ACX96444.1
TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: avi:Avi_9263 P-type conjugative transfer protein TrbJ.
 
     0.796
ACX96492.1
TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: eba:p2B6 conjugal transfer protein TrbG.
 
     0.796
ACX96493.1
PFAM: conjugation TrbI family protein; KEGG: avi:Avi_9647 conjugal transfer protein.
 
     0.796
ACX96442.1
TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: aav:Aave_0395 TrbL/VirB6 plasmid conjugal transfer protein.
 
     0.792
ACX96491.1
PFAM: Conjugal transfer protein; KEGG: app:CAP2UW1_4728 hypothetical protein.
 
     0.790
ACX96447.1
PFAM: Conjugal transfer protein TrbC; KEGG: avi:Avi_9659 conjugal transfer protein.
 
     0.789
Your Current Organism:
Halothiobacillus neapolitanus
NCBI taxonomy Id: 555778
Other names: H. neapolitanus c2, Halothiobacillus neapolitanus ATCC 23641, Halothiobacillus neapolitanus c2, Halothiobacillus neapolitanus str. c2, Halothiobacillus neapolitanus strain c2
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