STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmE2TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: mmb:Mmol_2029 ribosomal protein L31. (81 aa)    
Predicted Functional Partners:
rpsP
TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: avn:Avin_39560 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.998
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.997
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
   
 
 0.997
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.997
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.997
rpmA
TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: kpu:KP1_4904 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.996
rpmB
TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: pcr:Pcryo_1989 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
 
 
 0.996
rpmG
TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: pay:PAU_04370 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
 
 
 0.996
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.996
rpmJ
TIGRFAM: ribosomal protein L36; KEGG: tcx:Tcr_1270 ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.995
Your Current Organism:
Halothiobacillus neapolitanus
NCBI taxonomy Id: 555778
Other names: H. neapolitanus c2, Halothiobacillus neapolitanus ATCC 23641, Halothiobacillus neapolitanus c2, Halothiobacillus neapolitanus str. c2, Halothiobacillus neapolitanus strain c2
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.