STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ87176.1Pimeloyl-ACP methyl ester carboxylesterase. (312 aa)    
Predicted Functional Partners:
SDZ87203.1
methylmalonyl-CoA mutase, C-terminal domain.
    
  0.835
SEA20013.1
Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase).
    
 0.825
SDZ87187.1
LAO/AO transport system kinase.
       0.761
SEA10789.1
Serine/threonine protein phosphatase 1.
  
 
  0.702
SEA18019.1
Phosphoesterase, MJ0936 family.
    
  0.653
SDZ85394.1
Cytochrome P450.
 
 
 0.527
menD
2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC).
 
 
 0.522
SDZ88588.1
Cytochrome P450.
 
 
 0.506
SDZ87215.1
Hypothetical protein.
       0.501
SDZ87229.1
Centromere protein B.
       0.501
Your Current Organism:
Haloplanus vescus
NCBI taxonomy Id: 555874
Other names: CGMCC 1.8712, H. vescus, Haloplanus sp. RO5-8, Haloplanus vescus Cui et al. 2010, JCM 16055, strain RO5-8
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