STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA10587.1ATP-dependent helicase Lhr and Lhr-like helicase. (945 aa)    
Predicted Functional Partners:
SEA09345.1
Putative transcriptional regulator.
  
     0.573
top6B
DNA topoisomerase-6 subunit B; Relaxes both positive and negative superturns and exhibits a strong decatenase activity.
  
 
   0.568
SEA10550.1
Putative phosphoesterase.
 
    0.568
SEA10566.1
Hypothetical protein.
       0.547
SDZ93485.1
Putative membrane protein.
  
     0.517
SDZ86081.1
Putative membrane protein.
  
     0.502
SEA19464.1
Cell division control protein 6; Involved in regulation of DNA replication.
 
 
   0.487
lig
DNA ligase-1; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
 
    0.484
rpl1
LSU ribosomal protein L1P; Binds directly to 23S rRNA. Probably involved in E site tRNA release.
  
 
   0.471
rpl30
Large subunit ribosomal protein L30.
  
 
   0.452
Your Current Organism:
Haloplanus vescus
NCBI taxonomy Id: 555874
Other names: CGMCC 1.8712, H. vescus, Haloplanus sp. RO5-8, Haloplanus vescus Cui et al. 2010, JCM 16055, strain RO5-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.