STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA22691.1Hypothetical protein. (160 aa)    
Predicted Functional Partners:
SEA22671.1
TRAP transporter, 4TM/12TM fusion protein.
 
 
  0.993
SEA22715.1
Hypothetical protein.
 
 
  0.988
SDZ92727.1
Integrase/recombinase XerD.
  
     0.516
SEA22732.1
Phosphatidylserine decarboxylase.
       0.504
SEA22752.1
Replication factor C small subunit.
       0.504
SDZ78091.1
HEAT repeat.
  
     0.495
SEA07357.1
Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.478
SDZ97596.1
Halocyanin domain-containing protein.
  
     0.456
SEA27627.1
Hypothetical protein.
  
     0.442
SEA29644.1
Hypothetical protein.
  
     0.442
Your Current Organism:
Haloplanus vescus
NCBI taxonomy Id: 555874
Other names: CGMCC 1.8712, H. vescus, Haloplanus sp. RO5-8, Haloplanus vescus Cui et al. 2010, JCM 16055, strain RO5-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.