Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SDZ82358.1 | SDZ84224.1 | SAMN04488065_0585 | SAMN04488065_0711 | Nucleolar protein 56. | RNA-binding protein. | 0.944 |
| SDZ82358.1 | SEA22967.1 | SAMN04488065_0585 | SAMN04488065_2358 | Nucleolar protein 56. | Ribosomal RNA assembly protein. | 0.999 |
| SDZ82358.1 | guaAB | SAMN04488065_0585 | SAMN04488065_2834 | Nucleolar protein 56. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.897 |
| SDZ82358.1 | infB | SAMN04488065_0585 | SAMN04488065_1384 | Nucleolar protein 56. | Translation initiation factor 5B; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. | 0.702 |
| SDZ82358.1 | nop10 | SAMN04488065_0585 | SAMN04488065_0875 | Nucleolar protein 56. | H/ACA ribonucleoprotein complex subunit 3; Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA. | 0.538 |
| SDZ82358.1 | rpl7ae | SAMN04488065_0585 | SAMN04488065_0782 | Nucleolar protein 56. | Large subunit ribosomal protein L7Ae; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. | 0.999 |
| SDZ82358.1 | tmcA | SAMN04488065_0585 | SAMN04488065_0783 | Nucleolar protein 56. | tRNA(Met) cytidine acetyltransferase; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP). | 0.999 |
| SDZ82358.1 | truB | SAMN04488065_0585 | SAMN04488065_2808 | Nucleolar protein 56. | tRNA pseudouridine55 synthase; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. | 0.995 |
| SDZ84224.1 | SDZ82358.1 | SAMN04488065_0711 | SAMN04488065_0585 | RNA-binding protein. | Nucleolar protein 56. | 0.944 |
| SDZ84224.1 | guaAB | SAMN04488065_0711 | SAMN04488065_2834 | RNA-binding protein. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.834 |
| SDZ84224.1 | nop10 | SAMN04488065_0711 | SAMN04488065_0875 | RNA-binding protein. | H/ACA ribonucleoprotein complex subunit 3; Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA. | 0.999 |
| SDZ84224.1 | rpl7ae | SAMN04488065_0711 | SAMN04488065_0782 | RNA-binding protein. | Large subunit ribosomal protein L7Ae; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. | 0.999 |
| SDZ84224.1 | tmcA | SAMN04488065_0711 | SAMN04488065_0783 | RNA-binding protein. | tRNA(Met) cytidine acetyltransferase; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP). | 0.597 |
| SDZ84224.1 | truB | SAMN04488065_0711 | SAMN04488065_2808 | RNA-binding protein. | tRNA pseudouridine55 synthase; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. | 0.999 |
| SEA22967.1 | SDZ82358.1 | SAMN04488065_2358 | SAMN04488065_0585 | Ribosomal RNA assembly protein. | Nucleolar protein 56. | 0.999 |
| SEA22967.1 | infB | SAMN04488065_2358 | SAMN04488065_1384 | Ribosomal RNA assembly protein. | Translation initiation factor 5B; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. | 0.628 |
| SEA22967.1 | nop10 | SAMN04488065_2358 | SAMN04488065_0875 | Ribosomal RNA assembly protein. | H/ACA ribonucleoprotein complex subunit 3; Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA. | 0.633 |
| SEA22967.1 | rpl7ae | SAMN04488065_2358 | SAMN04488065_0782 | Ribosomal RNA assembly protein. | Large subunit ribosomal protein L7Ae; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. | 0.969 |
| SEA22967.1 | tmcA | SAMN04488065_2358 | SAMN04488065_0783 | Ribosomal RNA assembly protein. | tRNA(Met) cytidine acetyltransferase; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP). | 0.998 |
| SEA22967.1 | truB | SAMN04488065_2358 | SAMN04488065_2808 | Ribosomal RNA assembly protein. | tRNA pseudouridine55 synthase; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. | 0.930 |
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