STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR45336.1Myo-inositol-1(or 4)-monophosphatase. (283 aa)    
Predicted Functional Partners:
nusA
N utilization substance protein A; Participates in transcription termination. Belongs to the NusA family.
   
   0.643
SFR45327.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
 
     0.625
rpoK
DNA-directed RNA polymerase, subunit K; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit family.
   
   0.609
hisB
Imidazoleglycerol-phosphate dehydratase.
  
 
 0.597
SFR58960.1
Myo-inositol-1(or 4)-monophosphatase.
  
  
 
0.581
SFR31932.1
Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase).
 
    0.578
SFR45346.1
Hypothetical protein.
       0.574
spt5
LSU ribosomal protein L24A; Stimulates transcription elongation; Belongs to the archaeal Spt5 family.
   
 
 0.568
SFR45318.1
O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain.
 
     0.542
SFR44230.1
Glycerophosphoryl diester phosphodiesterase.
 
  
 0.511
Your Current Organism:
Halogeometricum limi
NCBI taxonomy Id: 555875
Other names: CGMCC 1.8711, H. limi, Halobacteriaceae archaeon RO1-6, Halogeometricum limi (Cui et al. 2010) Qiu et al. 2013, Halosarcina limi, Halosarcina limi Cui et al. 2010, JCM 16054, strain RO1-6
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