STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR46869.1Lactoylglutathione lyase. (256 aa)    
Predicted Functional Partners:
SFR31932.1
Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase).
 
 
 0.857
SFR41636.1
Glyoxylase, beta-lactamase superfamily II.
   
 
  0.791
SFR42611.1
Glyoxylase, beta-lactamase superfamily II.
   
 
  0.791
SFR50477.1
Glyoxylase, beta-lactamase superfamily II.
   
 
  0.791
SFR57958.1
Glyoxylase, beta-lactamase superfamily II.
  
  
  0.758
trpB
Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
   
  0.743
SFR33712.1
Lactoylglutathione lyase.
  
  
  0.717
SFR65409.1
Threonine dehydratase.
   
 
  0.707
SFR35354.1
Threonine dehydratase.
   
 
  0.699
SFR64287.1
Lactoylglutathione lyase.
  
  
  0.633
Your Current Organism:
Halogeometricum limi
NCBI taxonomy Id: 555875
Other names: CGMCC 1.8711, H. limi, Halobacteriaceae archaeon RO1-6, Halogeometricum limi (Cui et al. 2010) Qiu et al. 2013, Halosarcina limi, Halosarcina limi Cui et al. 2010, JCM 16054, strain RO1-6
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.