STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR49561.1Flagellin FlaB; Flagellin is the subunit protein which polymerizes to form the filaments of archaeal flagella. (220 aa)    
Predicted Functional Partners:
SFR43851.1
Flagellar protein FlaJ.
 
  
 0.820
SFR43866.1
Flagellar protein FlaH.
 
  
 0.809
SFR43859.1
Flagellar protein FlaI.
 
  
 0.638
SFR36012.1
Sugar-specific transcriptional regulator TrmB.
  
     0.532
SFR33170.1
Hypothetical protein.
  
     0.530
SFR43949.1
Chemotaxis protein CheC.
 
    0.525
SFR42019.1
ABC-type Na+ efflux pump, permease component.
  
     0.517
SFR52519.1
Hypothetical protein.
  
     0.509
SFR44332.1
RNA-binding protein.
  
     0.492
SFR55300.1
Uncharacterized membrane protein, DUF106 family.
  
     0.485
Your Current Organism:
Halogeometricum limi
NCBI taxonomy Id: 555875
Other names: CGMCC 1.8711, H. limi, Halobacteriaceae archaeon RO1-6, Halogeometricum limi (Cui et al. 2010) Qiu et al. 2013, Halosarcina limi, Halosarcina limi Cui et al. 2010, JCM 16054, strain RO1-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.