Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFR49804.1 | SFR49814.1 | SAMN04488124_1809 | SAMN04488124_1810 | Hypothetical protein. | DNA-binding TFAR19-related protein; Belongs to the PDCD5 family. | 0.967 |
SFR49804.1 | SFR60357.1 | SAMN04488124_1809 | SAMN04488124_2681 | Hypothetical protein. | Small ribonucleoprotein. | 0.502 |
SFR49804.1 | ef1b | SAMN04488124_1809 | SAMN04488124_2647 | Hypothetical protein. | Translation elongation factor 1B (aEF-1B); Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA. | 0.472 |
SFR49804.1 | rpl11 | SAMN04488124_1809 | SAMN04488124_2639 | Hypothetical protein. | Large subunit ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. | 0.675 |
SFR49804.1 | rpl22 | SAMN04488124_1809 | SAMN04488124_2266 | Hypothetical protein. | Large subunit ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.410 |
SFR49804.1 | rpl7ae | SAMN04488124_1809 | SAMN04488124_2665 | Hypothetical protein. | LSU ribosomal protein L7AE; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. | 0.819 |
SFR49804.1 | rps17 | SAMN04488124_1809 | SAMN04488124_2262 | Hypothetical protein. | Small subunit ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.835 |
SFR49804.1 | rps19e | SAMN04488124_1809 | SAMN04488124_1811 | Hypothetical protein. | Small subunit ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. | 0.927 |
SFR49804.1 | rps28e | SAMN04488124_1809 | SAMN04488124_2664 | Hypothetical protein. | SSU ribosomal protein S28E; Belongs to the eukaryotic ribosomal protein eS28 family. | 0.835 |
SFR49804.1 | rps7 | SAMN04488124_1809 | SAMN04488124_0516 | Hypothetical protein. | Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family. | 0.842 |
SFR49814.1 | SFR49804.1 | SAMN04488124_1810 | SAMN04488124_1809 | DNA-binding TFAR19-related protein; Belongs to the PDCD5 family. | Hypothetical protein. | 0.967 |
SFR49814.1 | SFR60357.1 | SAMN04488124_1810 | SAMN04488124_2681 | DNA-binding TFAR19-related protein; Belongs to the PDCD5 family. | Small ribonucleoprotein. | 0.899 |
SFR49814.1 | ef1b | SAMN04488124_1810 | SAMN04488124_2647 | DNA-binding TFAR19-related protein; Belongs to the PDCD5 family. | Translation elongation factor 1B (aEF-1B); Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA. | 0.898 |
SFR49814.1 | rpl11 | SAMN04488124_1810 | SAMN04488124_2639 | DNA-binding TFAR19-related protein; Belongs to the PDCD5 family. | Large subunit ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. | 0.880 |
SFR49814.1 | rpl22 | SAMN04488124_1810 | SAMN04488124_2266 | DNA-binding TFAR19-related protein; Belongs to the PDCD5 family. | Large subunit ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.913 |
SFR49814.1 | rpl7ae | SAMN04488124_1810 | SAMN04488124_2665 | DNA-binding TFAR19-related protein; Belongs to the PDCD5 family. | LSU ribosomal protein L7AE; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. | 0.890 |
SFR49814.1 | rps17 | SAMN04488124_1810 | SAMN04488124_2262 | DNA-binding TFAR19-related protein; Belongs to the PDCD5 family. | Small subunit ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.888 |
SFR49814.1 | rps19e | SAMN04488124_1810 | SAMN04488124_1811 | DNA-binding TFAR19-related protein; Belongs to the PDCD5 family. | Small subunit ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. | 0.954 |
SFR49814.1 | rps28e | SAMN04488124_1810 | SAMN04488124_2664 | DNA-binding TFAR19-related protein; Belongs to the PDCD5 family. | SSU ribosomal protein S28E; Belongs to the eukaryotic ribosomal protein eS28 family. | 0.910 |
SFR49814.1 | rps7 | SAMN04488124_1810 | SAMN04488124_0516 | DNA-binding TFAR19-related protein; Belongs to the PDCD5 family. | Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family. | 0.885 |
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