STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR64124.1Predicted dehydrogenase. (332 aa)    
Predicted Functional Partners:
SFR64130.1
Predicted dehydrogenase.
 
    
0.818
SFR64117.1
Cell division control protein 6; Involved in regulation of DNA replication.
       0.601
SFR64103.1
Hexulose-6-phosphate isomerase.
 
 
  0.587
SFR60613.1
Sugar phosphate isomerase/epimerase.
 
 
  0.559
SFR36851.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.555
SFR57787.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.553
SFR64700.1
Sugar phosphate isomerase/epimerase.
  
 
  0.508
SFR64624.1
Sugar phosphate isomerase/epimerase.
  
 
  0.471
SFR68581.1
Sugar phosphate isomerase/epimerase.
  
 
  0.443
SFR68595.1
Sugar phosphate isomerase/epimerase.
  
 
  0.440
Your Current Organism:
Halogeometricum limi
NCBI taxonomy Id: 555875
Other names: CGMCC 1.8711, H. limi, Halobacteriaceae archaeon RO1-6, Halogeometricum limi (Cui et al. 2010) Qiu et al. 2013, Halosarcina limi, Halosarcina limi Cui et al. 2010, JCM 16054, strain RO1-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.