Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AQM12216.1ATP-dependent protease; Derived by automated computational analysis using gene prediction method: Protein Homology. (192 aa)    
Predicted Functional Partners:
rpoE_1
RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
     
 0.798
AQM12218.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.763
EpsL
Type II secretion system protein GspL; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
     0.525
outN
General secretion pathway protein GspN; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.469
SufS
Cysteine sulfinate desulfinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
       0.459
AQM12215.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.455
AQM14592.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.452
EpsH
Type II secretion system protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.417
EpsI
Type II secretion system protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.409
Your Current Organism:
Vibrio anguillarum
NCBI taxonomy Id: 55601
Other names: ATCC 19264, Achromobacter ichthyodermis, CAIM 696, CCUG 47265, CIP 63.36, DSM 21597, IFO 13266, LMG 4437, LMG:4437, Listonella anguillara, Listonella anguillarum, NBRC 13266, NCCB 72050, NCIMB 6, NCTC 12159, Pseudomonas ichthyodermis, V. anguillarum, Vibrio ichthyodermis, Vibrio piscium, Vibrio piscium var. japonicus
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