STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mreBRod shape-determining protein MreB. (344 aa)    
Predicted Functional Partners:
EEO26363.1
Rod shape-determining protein MreC.
  
 
 0.970
EEO25396.1
Hypothetical protein.
   
 
 0.915
mrdA
Penicillin-binding protein 2.
 
 
 
 0.854
EEO25955.1
Putative rod shape-determining protein RodA; Belongs to the SEDS family.
 
 
 
 0.821
clpX
ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
   
 
 0.804
lpxA
acyl-[acyl-carrier-protein]-UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
  
    0.802
fabZ
Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.
       0.791
EEO26368.1
Putative glycolate oxidase, subunit GlcD.
       0.710
EEO26369.1
Hypothetical protein.
       0.687
prs
Ribose-phosphate diphosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
   
    0.685
Your Current Organism:
Helicobacter winghamensis
NCBI taxonomy Id: 556267
Other names: H. winghamensis ATCC BAA-430, Helicobacter winghamensis ATCC BAA-430, Helicobacter winghamensis str. ATCC BAA-430, Helicobacter winghamensis strain ATCC BAA-430
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.