STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APF40578.1NADPH-dependent FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (208 aa)    
Predicted Functional Partners:
APF39892.1
5,10-methylene tetrahydromethanopterin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.981
BHE16_04525
Hypothetical protein; SAM riboswitch class I; Derived by automated computational analysis using gene prediction method: cmsearch.
 
 0.939
APF40781.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.924
APF41796.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.913
APF40782.1
Nitrate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.912
APF40331.1
Riboflavin biosynthesis protein RibF; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribF family.
    
 0.905
APF39797.1
Sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.900
APF41627.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.900
APF40579.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.541
APF41304.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.425
Your Current Organism:
Neomicrococcus aestuarii
NCBI taxonomy Id: 556325
Other names: JCM 16364, KCTC 19557, Micrococcus sp. DY66, N. aestuarii, NBRC 109060, Neomicrococcus aestuarii (Baik et al. 2011) Prakash et al. 2015, Zhihengliuella aestuarii, Zhihengliuella aestuarii Baik et al. 2011, strain DY66
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