STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APF41109.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (370 aa)    
Predicted Functional Partners:
APF41863.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.995
APF41181.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.987
APF41862.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.954
APF41180.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 
0.928
APF41108.1
Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.916
APF39905.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.837
APF40232.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.826
BHE16_06870
ABC transporter; SAM riboswitch class I; Derived by automated computational analysis using gene prediction method: cmsearch.
 
 0.825
APF41010.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.815
APF41095.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.804
Your Current Organism:
Neomicrococcus aestuarii
NCBI taxonomy Id: 556325
Other names: JCM 16364, KCTC 19557, Micrococcus sp. DY66, N. aestuarii, NBRC 109060, Neomicrococcus aestuarii (Baik et al. 2011) Prakash et al. 2015, Zhihengliuella aestuarii, Zhihengliuella aestuarii Baik et al. 2011, strain DY66
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