STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
secAProtein translocase subunit SecA; Has a central role in coupling the hydrolysis of ATP to the transfer of proteins across the thylakoid membrane; Belongs to the SecA family. (886 aa)    
Predicted Functional Partners:
B7G8Q3_PHATC
Predicted protein.
    
 0.760
B7FPF6_PHATC
Predicted protein.
    
 0.688
B7G1T7_PHATC
Predicted protein.
   
 0.687
B7FSY7_PHATC
Predicted protein.
    
  0.639
secY
Protein translocase subunit SecY; The central subunit of the protein translocation channel SecYE. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug.
      
 0.602
chlI
Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family.
      
 0.577
ycf39
NmrA domain-containing protein.
      
 0.548
B7G787_PHATC
Predicted protein.
    
 0.487
Aurora-A
Predicted protein; Belongs to the protein kinase superfamily.
    
 
 0.474
B7GE94_PHATC
Predicted protein.
    
 
 0.474
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.