STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHATR_13232Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate. (505 aa)    
Predicted Functional Partners:
B7G9P5_PHATC
Citrate synthase; Belongs to the citrate synthase family.
   
  
 0.716
B7FZW5_PHATC
Urea transporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.628
PHATRDRAFT_768
Predicted protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.628
B7GCM1_PHATC
Predicted protein.
  
  
 0.628
B7GCN8_PHATC
Predicted protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.628
B7FRT7_PHATC
Predicted protein.
   
 
 0.618
P5CS
Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.
   
 
 0.618
B7G9F0_PHATC
Acetyl-coenzyme A synthetase.
  
  
 0.564
B7S3P0_PHATC
Acetyl-coenzyme A synthetase.
  
  
 0.564
B7G958_PHATC
LCTP l-lactate permease.
   
  
 0.519
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
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