STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHATR_43896Predicted protein. (161 aa)    
Predicted Functional Partners:
clpC
ATP-dependent clp protease ATP-binding subunit; Belongs to the ClpA/ClpB family.
  
 
 0.812
PHATR_25856
Predicted protein; Belongs to the ClpA/ClpB family.
  
 
 0.812
B7FUC8_PHATC
Predicted protein.
  
 
 0.812
B7G704_PHATC
Predicted protein; Belongs to the ClpA/ClpB family.
  
 
 0.812
B7GCV2_PHATC
Predicted protein; Belongs to the ClpA/ClpB family.
  
 
 0.812
LONM_PHATC
Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family.
  
  
 0.591
B7G8W2_PHATC
Arginyl-tRNA--protein transferase 1; Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway. Belongs to the R-transferase family.
   
  
 0.536
B7G1Y5_PHATC
Predicted protein.
     
 0.509
PHATR_21135
Predicted protein.
   
  
 0.479
PHATR_41790
Predicted protein.
   
  
 0.479
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
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