STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHATR_1379Predicted protein. (350 aa)    
Predicted Functional Partners:
PHATR_13360
Predicted protein.
    
 0.649
B7G9R9_PHATC
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.626
B7FXG6_PHATC
Predicted protein.
    
 0.621
PHATR_33304
Small nuclear ribonucleoprotein Sm D2.
    
 0.619
B7FZK9_PHATC
Predicted protein.
    
  0.610
B7G0G4_PHATC
Predicted protein.
   
  0.603
B7G5J8_PHATC
Predicted protein.
    
 0.603
B7GBK9_PHATC
Predicted protein.
    
  0.541
PHATR_46793
Predicted protein.
  
     0.512
B7FY78_PHATC
Predicted protein.
    
 0.510
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.