STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Skp1_1Predicted protein; Belongs to the SKP1 family. (169 aa)    
Predicted Functional Partners:
B7FU62_PHATC
Predicted protein.
   
 0.999
Rbx1
Predicted protein.
   
 0.933
B7FSM1_PHATC
Predicted protein.
   
 0.900
B7FUL5_PHATC
Predicted protein.
   
 0.900
UBI1/2
Ubiquitin extension protein 1/2.
    
  0.870
B7FW73_PHATC
Predicted protein.
   
 
 0.867
rpl2
50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family.
   
 0.838
PHATR_44003
Predicted protein.
    
 0.837
B7G517_PHATC
Predicted protein.
    
 0.837
B7G8Q3_PHATC
Predicted protein.
    
 0.832
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.