STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCYBPrecursor of cyclase lycopene beta cyclase. (659 aa)    
Predicted Functional Partners:
PSY
Phytoene synthase.
      
 0.771
VDE
Violaxanthin deepoxidase.
      
 0.769
ZEP1
Zeaxanthin epoxidase.
   
  
 0.714
ZEP2
Precursor of protein zeaxanthin epoxidase-like protein.
   
  
 0.711
ZEP3
Zeaxanthin epoxidase.
   
  
 0.705
DXS
Precursor of synthase DXS 1-deoxy-d-xylulose-5-phosphate synthase.
      
 0.698
ZDS
Zeta-carotene desaturase.
      
 0.669
PDS2
Amine oxidase.
      
 0.669
B7FVQ7_PHATC
Imidazole glycerol phosphate synthase hisHF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutaminase domain produces the ammonia necessary for the cyclase domain to produce IGP and AICAR from PRFAR. The ammonia is channeled to the active site of the cyclase domain. Belongs to the HisA/HisF family.
      
 0.659
B7FYU1_PHATC
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.
      
 0.654
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
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