STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B7FQA4_PHATCPredicted protein. (156 aa)    
Predicted Functional Partners:
B7FQA3_PHATC
Predicted protein.
 
  
  0.993
B7G7J6_PHATC
Predicted protein.
  
 
0.973
B7G0L8_PHATC
Predicted protein.
    
 0.962
B7G1K8_PHATC
Predicted protein.
   
 0.926
LSM1
U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.
    
 0.917
B7GBB7_PHATC
Predicted protein.
    
 0.915
LSM3
U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.913
B7G4K6_PHATC
Predicted protein; Belongs to the universal ribosomal protein uL11 family.
 
      0.836
B7G0I5_PHATC
Predicted protein.
 
      0.801
B7GDQ5_PHATC
Predicted protein.
    
 0.759
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.