STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GapC4Glyceraldehyde-3-phosphate dehydrogenase. (336 aa)    
Predicted Functional Partners:
TIM_1
Triosephosphate isomerase.
 
 0.991
PGK
Phosphoglycerate kinase.
 
 0.979
B7G5G4_PHATC
Phosphoglycerate kinase.
 
 0.957
Tkl
Transketolase.
  
 
 0.954
B7G5R3_PHATC
Transketolase.
  
 
 0.937
Fba4
Cytosolic aldolase.
  
 0.907
GPI_2
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.880
GPI_3
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.880
PHATR_28222
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
  
 
 0.859
FSA
Aldolase fructose-6-phosphate-aldolase.
  
 
 0.859
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.