STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B7FVS6_PHATCPredicted protein. (340 aa)    
Predicted Functional Partners:
PHATR_44232
ATP-dependent Clp protease proteolytic subunit.
 
 
 0.756
B7GCT9_PHATC
ATP-dependent Clp protease proteolytic subunit.
 
 
 0.756
clpP
ATP-dependent Clp protease proteolytic subunit.
 
 
 0.748
B7FTX1_PHATC
ATP-dependent Clp protease proteolytic subunit.
 
 
 0.746
PHATR_10593
ATP-dependent Clp protease proteolytic subunit; Belongs to the peptidase S14 family.
 
 
 0.739
B7FZS4_PHATC
ATP-dependent Clp protease proteolytic subunit; Belongs to the peptidase S14 family.
 
 
 0.737
LONM_PHATC
Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family.
 
 
 0.693
B7GBW5_PHATC
Predicted protein; Belongs to the AAA ATPase family.
 
 
  
 0.623
B7FQI2_PHATC
Predicted protein.
     
 0.528
atpB
ATP synthase subunit beta, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
 
    
 0.517
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.