STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B7FXK7_PHATCPredicted protein. (602 aa)    
Predicted Functional Partners:
B7FWX7_PHATC
Predicted protein.
  
 
 0.832
B7FUC3_PHATC
Predicted protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.763
B7G661_PHATC
Predicted protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.753
B7G888_PHATC
Predicted protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.736
GluRS_1
Glutamate-trna ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.695
B7FZQ5_PHATC
Tyrosine--tRNA ligase.
  
  
 0.679
B7FRF4_PHATC
Predicted protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.669
B7G8G1_PHATC
Predicted protein.
   
  
 0.643
B7GBQ6_PHATC
Predicted protein.
   
  
 0.643
B7FZB7_PHATC
Predicted protein.
  
 
 0.623
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
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