B7FXU1_PHATC protein (Phaeodactylum tricornutum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B7FXU1_PHATC

Predicted protein. (559 aa)

Predicted Functional Partners:

B7G9I9_PHATC

0.728

B7FPL9_PHATC

0.642

B7FQB5_PHATC

0.640

B7FVD5_PHATC

0.618

PHATR_44183

0.606

GEL1

0.606

B7FXZ8_PHATC

0.606

B7G8V9_PHATC

0.606

Sec4

0.606

B7FSF5_PHATC

0.598

Your Current Organism:

Phaeodactylum tricornutum

NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B7FPL9_PHATC	B7FXU1_PHATC	B7FPL9	B7FXU1	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Predicted protein.	0.642
B7FPL9_PHATC	B7FXZ8_PHATC	B7FPL9	B7FXZ8	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	F-actin-capping protein subunit alpha; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.993
B7FPL9_PHATC	B7G8V9_PHATC	B7FPL9	B7G8V9	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Predicted protein.	0.606
B7FPL9_PHATC	B7G9I9_PHATC	B7FPL9	B7G9I9	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Predicted protein; Belongs to the actin-binding proteins ADF family.	0.898
B7FPL9_PHATC	GEL1	B7FPL9	B7FPI9	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Gelsolin.	0.642
B7FPL9_PHATC	PHATR_44183	B7FPL9	B5Y5L8	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Predicted protein.	0.606
B7FPL9_PHATC	Sec4	B7FPL9	B7G9L9	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Predicted protein.	0.706
B7FQB5_PHATC	B7FSF5_PHATC	B7FQB5	B7FSF5	Predicted protein.	Predicted protein.	0.999
B7FQB5_PHATC	B7FVD5_PHATC	B7FQB5	B7FVD5	Predicted protein.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.999
B7FQB5_PHATC	B7FXU1_PHATC	B7FQB5	B7FXU1	Predicted protein.	Predicted protein.	0.640
B7FQB5_PHATC	B7FXZ8_PHATC	B7FQB5	B7FXZ8	Predicted protein.	F-actin-capping protein subunit alpha; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.476
B7FQB5_PHATC	GEL1	B7FQB5	B7FPI9	Predicted protein.	Gelsolin.	0.640
B7FSF5_PHATC	B7FQB5_PHATC	B7FSF5	B7FQB5	Predicted protein.	Predicted protein.	0.999
B7FSF5_PHATC	B7FVD5_PHATC	B7FSF5	B7FVD5	Predicted protein.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.999
B7FSF5_PHATC	B7FXU1_PHATC	B7FSF5	B7FXU1	Predicted protein.	Predicted protein.	0.598
B7FSF5_PHATC	GEL1	B7FSF5	B7FPI9	Predicted protein.	Gelsolin.	0.598
B7FVD5_PHATC	B7FQB5_PHATC	B7FVD5	B7FQB5	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Predicted protein.	0.999
B7FVD5_PHATC	B7FSF5_PHATC	B7FVD5	B7FSF5	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Predicted protein.	0.999
B7FVD5_PHATC	B7FXU1_PHATC	B7FVD5	B7FXU1	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Predicted protein.	0.618
B7FVD5_PHATC	B7FXZ8_PHATC	B7FVD5	B7FXZ8	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	F-actin-capping protein subunit alpha; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.480