STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B7FZS0_PHATCPredicted protein. (449 aa)    
Predicted Functional Partners:
PHATR_13360
Predicted protein.
   
 0.657
PHATR_13520
Nuclear cap-binding protein subunit 2.
    
 0.603
B7GDQ3_PHATC
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
   
 0.601
B7FYV9_PHATC
Predicted protein.
    
 0.597
B7G5J8_PHATC
Predicted protein.
   
 0.594
B7G9R9_PHATC
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.591
B7G0G4_PHATC
Predicted protein.
   
 0.583
B7FV44_PHATC
Predicted protein.
   
 0.567
B7FZK9_PHATC
Predicted protein.
   
 0.562
B7FVB2_PHATC
Predicted protein.
   
  0.546
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.