STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B7G0X7_PHATCPredicted protein. (314 aa)    
Predicted Functional Partners:
SQLE_PHATC
Alternative squalene epoxidase; Catalyzes the stereospecific epoxidation of squalene at the terminal double bond to form (S)-2,3-epoxysqualene, the first oxygenation step in sterol biosynthesis.
  
 0.979
B7GEJ8_PHATC
Predicted protein; Belongs to the cytochrome P450 family.
 
 
 0.946
B7G8M9_PHATC
Reductase with NAD or NADP as acceptor; Belongs to the 3-beta-HSD family.
  
 
 0.934
B7G3T2_PHATC
Predicted protein; Belongs to the FPP/GGPP synthase family.
  
 0.928
B7GA81_PHATC
Predicted protein; Belongs to the FPP/GGPP synthase family.
  
 0.928
B7FU89_PHATC
Farnesyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
 0.900
B7FYW0_PHATC
Predicted protein.
     
 0.849
PHATR_645
Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.
 
  
 0.829
B7FUY9_PHATC
Predicted protein; Belongs to the sterol desaturase family.
  
 
 0.828
B7G9G5_PHATC
Predicted protein; Belongs to the sterol desaturase family.
  
 
 0.828
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.