STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B7G3M6_PHATCPredicted protein. (204 aa)    
Predicted Functional Partners:
GMD1
Gdp-mannose 4,6-dehydratase.
  
  
 0.523
B7GAH4_PHATC
Predicted protein.
    
 0.508
hUba1
Ubiquitin-activating enzyme E1, protein 2; Belongs to the ubiquitin-activating E1 family.
 
  
 0.495
B7FQI2_PHATC
Predicted protein.
     
 0.469
B7G3N1_PHATC
Predicted protein.
   
 0.469
B7FYE5_PHATC
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
      0.448
B7G5H9_PHATC
Aspartokinase; Belongs to the aspartokinase family.
     
 0.448
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.