STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AP4sigmaAP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (157 aa)    
Predicted Functional Partners:
B7GDY1_PHATC
Predicted protein.
  
 
 0.936
PHATR_13511
Predicted protein.
    
 0.904
AP4beta
Predicted protein.
  
 
 0.895
rpl27
50S ribosomal protein L27, chloroplastic.
    
 0.835
AP4mu
Predicted protein; Belongs to the adaptor complexes medium subunit family.
  
 
 0.835
PtAP1/2beta
Predicted protein.
    
 0.835
AP3delta
Predicted protein.
    
 0.804
AP1alpha
AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.
    
 0.804
CHC
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 0.757
SMP1
Metalloprotease.
    
 0.729
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
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