STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B7G690_PHATCPredicted protein. (308 aa)    
Predicted Functional Partners:
RPE2
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
 
    0.585
Sec61alpha
Transport protein Sec61 alpha subunit; Belongs to the SecY/SEC61-alpha family.
   
  
 0.545
B7GDR8_PHATC
Predicted protein.
 
    
 0.517
B7FX26_PHATC
Predicted protein.
   
    0.511
B7S490_PHATC
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
      
 0.483
Spc12
Signal peptidase 12 kDa subunit.
   
  
 0.466
B7FSJ4_PHATC
Predicted protein.
      
 0.463
PHATR_52108
Alpha-mannosidase.
      
 0.437
B7GB69_PHATC
Predicted protein.
   
 
 0.414
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.