STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B7G6V2_PHATCPredicted protein. (541 aa)    
Predicted Functional Partners:
UBI3
Ubiquitin extension protein 3.
    
 0.951
B7G8Q3_PHATC
Predicted protein.
   
 0.876
B7GDM5_PHATC
Autophagy-related protein.
   
 
 0.845
B7FVB2_PHATC
Predicted protein.
    
 0.823
B7FXT2_PHATC
Predicted protein.
    
 0.823
sUbi
Ubiquitin-like protein.
    
 0.810
hUbi
Ubiquitin extension protein 4.
    
 0.810
B7G9A2_PHATC
Predicted protein.
    
 0.810
B7G2B6_PHATC
Predicted protein.
   
 
 0.809
B7G7Z6_PHATC
Predicted protein.
    
 0.795
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.