STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B7G8L5_PHATCPredicted protein. (903 aa)    
Predicted Functional Partners:
B7FSQ4_PHATC
Predicted protein.
   
 0.999
B7FVR5_PHATC
Predicted protein.
   
 0.992
B7FSH9_PHATC
Predicted protein.
   
 0.973
B7FSG1_PHATC
Predicted protein.
   
 0.916
B7GDR2_PHATC
Predicted protein.
   
 
 0.792
B7FSP6_PHATC
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
   
 0.758
B7FSQ2_PHATC
Predicted protein.
   
 
 0.690
B7GCP8_PHATC
Predicted protein.
     
 0.686
B7G7J6_PHATC
Predicted protein.
   
 
 0.684
B7FRR0_PHATC
Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.
   
 
 0.677
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
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