B7G8U6_PHATC protein (Phaeodactylum tricornutum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B7G8U6_PHATC

Predicted protein. (516 aa)

Predicted Functional Partners:

AP2mu

0.975

AP1alpha

0.968

B7FQF9_PHATC

0.869

rpl27

0.842

AP4beta

0.842

PtAP1/2beta

0.842

PHATR_13511

0.802

AP3delta

0.802

B7GDY1_PHATC

0.802

CHC

0.794

Your Current Organism:

Phaeodactylum tricornutum

NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AP1alpha	AP2mu	B7FY75	B7FSB1	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	Predicted protein; Belongs to the adaptor complexes medium subunit family.	0.999
AP1alpha	AP3delta	B7FY75	B7FQE6	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	Predicted protein.	0.635
AP1alpha	AP4beta	B7FY75	B7G374	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	Predicted protein.	0.952
AP1alpha	B7FQF9_PHATC	B7FY75	B7FQF9	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	Predicted protein.	0.819
AP1alpha	B7G8U6_PHATC	B7FY75	B7G8U6	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	Predicted protein.	0.968
AP1alpha	CHC	B7FY75	B7G4Y3	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.933
AP1alpha	PHATR_13511	B7FY75	B5Y3G8	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	Predicted protein.	0.509
AP1alpha	PtAP1/2beta	B7FY75	B7S4C6	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	Predicted protein.	0.952
AP1alpha	rpl27	B7FY75	A0T0G4	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	50S ribosomal protein L27, chloroplastic.	0.928
AP2mu	AP1alpha	B7FSB1	B7FY75	Predicted protein; Belongs to the adaptor complexes medium subunit family.	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.999
AP2mu	AP3delta	B7FSB1	B7FQE6	Predicted protein; Belongs to the adaptor complexes medium subunit family.	Predicted protein.	0.941
AP2mu	AP4beta	B7FSB1	B7G374	Predicted protein; Belongs to the adaptor complexes medium subunit family.	Predicted protein.	0.961
AP2mu	B7FQF9_PHATC	B7FSB1	B7FQF9	Predicted protein; Belongs to the adaptor complexes medium subunit family.	Predicted protein.	0.898
AP2mu	B7G8U6_PHATC	B7FSB1	B7G8U6	Predicted protein; Belongs to the adaptor complexes medium subunit family.	Predicted protein.	0.975
AP2mu	B7GDY1_PHATC	B7FSB1	B7GDY1	Predicted protein; Belongs to the adaptor complexes medium subunit family.	Predicted protein.	0.912
AP2mu	CHC	B7FSB1	B7G4Y3	Predicted protein; Belongs to the adaptor complexes medium subunit family.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.908
AP2mu	PHATR_13511	B7FSB1	B5Y3G8	Predicted protein; Belongs to the adaptor complexes medium subunit family.	Predicted protein.	0.941
AP2mu	PtAP1/2beta	B7FSB1	B7S4C6	Predicted protein; Belongs to the adaptor complexes medium subunit family.	Predicted protein.	0.961
AP2mu	rpl27	B7FSB1	A0T0G4	Predicted protein; Belongs to the adaptor complexes medium subunit family.	50S ribosomal protein L27, chloroplastic.	0.941
AP3delta	AP1alpha	B7FQE6	B7FY75	Predicted protein.	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.635