STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B7G9G5_PHATCPredicted protein; Belongs to the sterol desaturase family. (260 aa)    
Predicted Functional Partners:
B7GEJ8_PHATC
Predicted protein; Belongs to the cytochrome P450 family.
   
 
 0.973
PHATR_645
Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.
   
 
 0.936
B7G8M9_PHATC
Reductase with NAD or NADP as acceptor; Belongs to the 3-beta-HSD family.
   
 
 0.931
SQLE_PHATC
Alternative squalene epoxidase; Catalyzes the stereospecific epoxidation of squalene at the terminal double bond to form (S)-2,3-epoxysqualene, the first oxygenation step in sterol biosynthesis.
   
 
 0.880
B7G2W6_PHATC
Predicted protein; Belongs to the sterol desaturase family.
   
 
 0.880
B7G425_PHATC
Predicted protein; Belongs to the sterol desaturase family.
   
 
 0.880
PSY
Phytoene synthase.
  
 
 0.828
B7G0X7_PHATC
Predicted protein.
  
 
 0.828
PHATR_33435
Predicted protein; Belongs to the sterol desaturase family.
   
 
 0.704
B7GE13_PHATC
3-hydroxy-3-methylglutaryl coenzyme A reductase.
   
  
 0.682
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.