STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B7GC53_PHATCPredicted protein. (617 aa)    
Predicted Functional Partners:
B7FR35_PHATC
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
    
 
 0.984
PHATR_43830
Vacuolar protein sorting-associated protein 35.
   
 
 0.828
Rab6
Predicted protein.
   
 
 0.676
B7FYJ6_PHATC
Predicted protein.
   
 
 0.658
B7GCS5_PHATC
Predicted protein.
   
 
 0.658
B7GEQ9_PHATC
Predicted protein.
      
 0.577
B7FXZ5_PHATC
Predicted protein.
    
 
 0.506
B7G8K6_PHATC
ER membrane protein complex subunit 3; Belongs to the EMC3 family.
      
 0.463
PHATR_20948
Predicted protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
      
 0.447
B7G1Q8_PHATC
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.
    
 
 0.407
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.