STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B7GDF7_PHATCPredicted protein. (823 aa)    
Predicted Functional Partners:
PHATR_46837
Predicted protein.
   
 0.999
PHATR_18559
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
  0.999
PHATR_44242
Predicted protein.
   
 0.999
BMS1
Ribosome biogenesis protein BMS1.
   
 
 0.999
SAS1
Regulator of chromatin silencing.
   
 0.999
B7FRH6_PHATC
Predicted protein.
   
 0.999
B7FS85_PHATC
Predicted protein.
   
 
 0.999
PHATRDRAFT_708
Predicted protein.
   
 0.999
B7FXK9_PHATC
Predicted protein.
   
  0.999
B7FXP7_PHATC
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.999
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.