STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B7GDS3_PHATCSpermine/spermidine synthase; Belongs to the spermidine/spermine synthase family. (299 aa)    
Predicted Functional Partners:
B7FPB8_PHATC
Predicted protein.
    
 0.927
ODC2
Ornithine decarboxylase 2; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 0.919
B7G786_PHATC
Predicted protein.
  
 
 0.919
LKRSDH
Saccharopine dehydrogenase.
    
 0.908
B7G5Q3_PHATC
Predicted protein.
     
  0.900
B7GDY8_PHATC
Probable methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P).
   
 
 0.640
B7G899_PHATC
Predicted protein.
 
 
  
 0.602
B7FRT7_PHATC
Predicted protein.
   
  
 0.472
P5CS
Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.
   
  
 0.472
B7G627_PHATC
Arginase; Belongs to the arginase family.
  
  
 0.465
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
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