STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B7GEN5_PHATCPredicted protein. (819 aa)    
Predicted Functional Partners:
B7FQS4_PHATC
Predicted protein.
  
 
 0.720
DEI1
Delta-3,5-delta-2,4-dienoyl-CoA isomerase.
 
      0.706
B7FZ93_PHATC
Predicted protein.
   
 
 0.577
B7FWV9_PHATC
Predicted protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.562
HAD2
3-hydroxyacyl-coenzyme A dehydrogenase.
  
  
 0.449
tufA
Elongation factor Tu, chloroplastic; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.
   
    0.410
TufA
Predicted protein.
   
    0.410
B7FYE1_PHATC
Predicted protein; Belongs to the cytochrome b5 family.
  
  
 0.404
B7G997_PHATC
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.
  
  
 0.404
B7GAC3_PHATC
Predicted protein.
  
  
 0.404
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.