STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B7GER4_PHATCPredicted protein; Belongs to the AAA ATPase family. (379 aa)    
Predicted Functional Partners:
B7FUL9_PHATC
Predicted protein.
 
 
 0.723
PHATR_33159
Predicted protein.
 
 
  0.703
hNpl4
Predicted protein.
   
 0.702
B7FQE3_PHATC
Predicted protein.
    
 0.688
RPN10
Regulatory proteasome non-atpase subunit 10.
   
 0.676
PHATR_46652
Predicted protein.
    
 0.666
B7G2P4_PHATC
Machado-joseph disease-like protein.
    
 0.646
RPN1
Regulatory proteasome non-atpase subunit 1.
   
 0.637
B7FRC7_PHATC
Predicted protein; Belongs to the AAA ATPase family.
  
 
0.636
SNAP
Predicted protein.
    
 0.624
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.