STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B7S404_PHATCPeptidylprolyl isomerase. (646 aa)    
Predicted Functional Partners:
B7FWJ5_PHATC
Predicted protein.
  
 
 0.989
B7GDP3_PHATC
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family.
  
 
 0.978
B7FTI0_PHATC
Predicted protein.
  
 
 0.975
rps7
30S ribosomal protein S7, chloroplastic; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit.
  
 
 0.974
B7G544_PHATC
Predicted protein; Belongs to the universal ribosomal protein uS7 family.
  
 
 0.974
B7FY86_PHATC
Predicted protein.
  
 
 0.965
rps19-2
Predicted protein; Belongs to the universal ribosomal protein uS19 family.
  
 
 0.964
B7G1A9_PHATC
Predicted protein.
   
 
 0.963
rps2
30S ribosomal protein S2, chloroplastic.
  
 
 0.943
rpl24
50S ribosomal protein L24, chloroplastic; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
  
 
 0.943
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.